Invited talk:
Computational systems biology for complex diseases,
Nov 28-29,
ENS Paris-Saclay, Cachan
Residence: Simons Institute Program
Proofs, Consensus, and Decentralizing Society, Berkeley, Aug 21-Dec 16
Invitation: NII Shonan Meeting on "Formal methods for the synthesis of biomolecular circuits", Sep 1-6
Invitation: ETHCC conference, Mar 5-7, CNAM, Paris
Invitation: "Scaling Limits of Dynamical Processes on Random Graphs",
2019 BIRS Workshop
,
May 19-24, Oaxaca (declined)
Invited talk:
2nd workshop on quantitative molecular biology, May 22-24, Amsterdam
Invited talk:
2nd Logic and Learning workshop, Bellairs Research Centre, Barbados, Mar 15-22
Invited talk:
PIHOC'19, Feb 6-7, Bologna
Invitation:
International Workshop on Blockchain, BPJRI, CNAM, Jan 21-22, Paris
Invitation: L'impact de l'autonomie technologique sur l'état de droit
(Collège des Bernardins) - cycle Jan-Jun
Invitation:
Institut de l'ENS - Série Blockchain et Tokenomics,
Jan-Jun, Paris
-
Organisation: International Conference on Tokenomics with Sara Tucci (CEA),
Bruno Biais (HEC), Maria Potop-Butucaru (UPMC), Julien Prat (CNRS, CREST)
10-12 May, ENS, Paris
-
Course: whole-cell modelling Jan 28-Feb 1, CRI, Paris
PC: MWS'19 (modeling the world's system), Washington DC May 13-15
PC: International Conference on Tokenomics, ENS, May 10-12, Paris
PC: BSC19 (NTMS) Workshop on Blockchains and Smart Contracts workshop
WG: Workshop on IA and autonomy (Primavera de Fillipi)
Keynote:
9th International Conference on Complex Systems Design & Management
CSD&M 2018, Dec 18-19, Paris
Invitation:
Journées BIOSS-IA, Dec 18-19, Institut Pasteur, Paris
Invitation:
ELI (European Law Institute) workshop on blockchains and contracts,
Université Paris-1 Panthéon-Sorbonne Dec 17, Paris
Invited talk:
ICO et cryptoactifs, LaBChain consortium, CDC Oct 12, Paris
Invited talk:
Workshop on Tokenomics & Sound Money (Blockchain Embassy), Sep 28, Berlin
Invited talk:
a weak consensus algorithm with applications to side-chaining
,
Asseth meeting Sep 4,
Paris
Invited seminar:
"Typology of blockchains",
Blockchain Perspectives Joint Research Initiative,
Université Paris 2 Panthéon, Jun 18
Invited talk:
Integrative Cell Models for Disease Intervention, Jun 10-15,
Banff International Research Station (BIRS) (declined)
Invited talk:
position-dependent Langevin dynamics,
Workshop on Data-Driven Modelling of Complex Systems,
Alan Turing Institute, London, May 8-10, 2018
Invited talk:
Applied Category Theory Apr 30-May 4, Lorentz Center,
Leiden (declined)
Invited talk: "Consensus and Privacy" at
IHEIE,
Ecole des Mines, Apr 11
Invited talk:
Logic and Learning workshop, Bellairs Research Centre,
Barbados, Mar 16-23
Invited talk:
PIHOC'18, Feb 22-23, Bologna (declined)
Invitation:
Dagstuhl Seminar on Formal Methods for the Synthesis
of Biomolecular Circuits, 18082, Feb 18-23 (declined)
-
Course: Introduction to programming and Machine Learning, L1, CRI
-
Invitation:
projet QAXH - BPCE, Nov 6, Paris
Consultation sur la Direction du programme Economie numérique
sur PIA3 et ecosysteme blockchain
Audition sur Blockchain pour le Ministère de l'Économie et des Finances
(PIPAME, DGE, AIFE) et le pole Systematic, Aug 20, Paris
Audition devant l'OPECST dans le cadre de la mission d'information parlementaire
sur Blockchain, May 24
Audition Blockchain Institut Montaigne, Mar 15
Participation à la mission Jean-Pierre Landau aupres du Ministre Bruno Lemaire, Mar 23
et Apr 9
Membre du projet: "Blockchains and Smart Contracts" (European Law Institute)
Co-rédacteur document blockchain cellule de veille et prospective de l'INRIA
-
Organisation:
Interdisciplinary Workshop on Blockchains Jul 2,
Ecole Normale Supérieure , Paris,
-
Undergrad students
Raja Ben Ali (Epitech) - off-chain contracts
-
Secondary proposer on COST Action Proposal OC-2018-1-22914
on Blockchain foundations and applications (under review)
PhD Committee: Clovis Eberhart, Chambery, Jun 22
Comité de selection:
Recrutement sur un poste de professeur
IRIF-Université Paris-Diderot Apr 12 and May 17
Invitation:
Reunion Workshop on Logical Structures in Computation,
Simons Institute, Berkeley
Dec 11-14
Invited talk:
1st workshop on quantitative molecular biology
Dec 7-8, Paris
Invitation:
Dagstuhl Seminar on graph rewriting approaches to
computational chemistry, 17452, Nov 5-10 (declined)
Invited talk: Workshop on Major Transitions, Jun 29-30,
Centre de Recherches Interdisciplinaires, Paris
Invited talk: Cosmos meeting, Jun 21, UPMC, Paris
Invited talk: joint CALCO-MFPS session on metrics, privacy, and
learning, Lubjana, Jun 12-16 (14)
Invited seminar:
Consensus ex post vs ex ante,
Séminaire blockchain, Ecole Polytechnique, May 4, Palaiseau
Invited seminar: "Bayesian inversion as an adjunction"
IPM School of Mathematics, Tehran, Feb 22
Invitation: Complexity Science Hub Vienna, Workshop on payment and value
systems for emerging economies, Feb 2-3, Vienna
Invited talk: 40 years of abstract
interpretation , POPL workshop Jan 21 2017, Paris
Invited seminar: "Stochastic Growth models",
Theoretical physics seminar ESPCI, Jan 12
-
Course: Disruptive Technologies and Public Policy, Sciences Po,
School of Public Affairs, Paris, Sep-Nov
co-PI sur le Projet Moneytrack lauréat du concours FUI 24 de la BPI
Co-author of the segment of the INRIA strategic plan 2018-2022 on
distributed cryptosystems and blockchains (2017)
Membre du groupe de travail Blockchain de l'agence France-Stratégie.
Présentation sur les directions de recherche dans le monde blockchain
Agence France-Stratégie, Sep 20
Invitation: Comité de pilotage du Groupe
thématique Systèmes
d'information de Systematic, Paris, Jun 1
Invitation: Liverpool computational chemistry department, Jun
Invitation: USTC Shanghai's Institute for Advanced Studies, Shanghai,
Jul 27-Aug 10
Member of the ERC
Consolidator evaluation panel PE1 (Mathematics)
-
Organisation: séminaire
Blocksem,
Ecole Polytechnique
HDR Committee (President): Damian Markham LIP6, UPMC, Jul 5, Paris
Co-rédacteur d'un accord de recherche INRIA et Fondation Tezos
portant sur la Blockchain, Jul
Rédacteur d'une demande
de création d'un INRIA Project lab "Blockchain Backbones", May
PC: CMSB'17
Invited talk: CONCUR
2016, Quebec, Aug 25-26
Residence: Simons Institute Program Logical
Structures and Computations, Berkeley, Aug 17-Dec 16
Invited talk: SysMod SIG
2016, ISMB, Orlando, Jul 9
Invited talk: Xenobiology 2,
XB2, May 24-26, Berlin
Seminar: IPM School of Biosciences, Tehran, Jan
Invited talk: IPM Formal Methods
Day, Teheran, Jan 10
-
Course: Disruptive Technologies and Public Policy, Sciences Po, School
of Public Affairs, Paris, Sep-Nov
Research project: ANR Repas
-
Organisation:
Workshop Ambascience FR-UK day on "digital governance"", May 29, London
-
PC: Computational
Methods in Systems Biology, CMSB'16, Cambridge, Sep 21-23
PC: Complexis'17
PC: LICS 2017, Reykjavik (declined)
-
PhD students finished 2016
Guoli Yang (Edinburgh) - "Learning in Adaptive Networks"
-
MSc. Interns (ENS)
David Rodrigues - Toy growth models of the tRNA macroeconomics
Invitation: Alan Turing Institute
Scoping Workshop, Networks and Big Data, London, Dec 18
Invitation: Alan Turing Institute Scoping Workshop, Data Rich Phenomena -
Modelling, Analysing & Simulation Using Partial Differential
Equations, Dec 14-16, Cambridge
Keynote: Design,
optimization, and control in systems and synthetic biology, Paris,
ENS, Nov 12-13
Invitation: Alan Turing
Institute Scoping Workshop, Topological data analysis, London, Sep
10-11(declined)
Keynote: Static Analysis and Systems
Biology, SASB, Saint-Malo Sep 8
Talk:
Conference de rentree des eleves, ENS Cachan, Sep 7
Invitation:
Simons Institute workshop on Dynamic
Biological Modeling: Abstractions, Algorithms and Logic, Berkeley,
Aug 10-14 (declined)
Keynote: 7th Conference on
Reversible Computation, RC'15, Grenoble, Jul 16-17
Keynote: Tsinghua Software
Days 2015, Tsinghua, Beijing, Apr 20-21
-
Member of the ERC Consolidator
evaluation panel PE1 (Mathematics)
Member of the Board of the
Centre de Recherches Interdisciplinaires
-
PC (co-chair and organisation):
Integrative Cell Models, Lorentz Workshop, Leiden, Jan
26-30
PC (co-chair and organisation):
Self-assembly and Self-organization in Computer Science and Biology
Seminar 15402, Dagstuhl, Sep 27-Oct 2 (mentioned in Avi Wigderson's recent
book)
PC: 7th Conference on
Reversible Computation, RC'15, Grenoble, Jul 16-17
PC: Fourth International Workshop on
Hybrid Systems Biology, HSB'15, Sep 4-5 (declined)
PC: Complexis'16 (declined)
-
Participant to the
ICT COST Action
on Reversible Computation
-
School: Advance Course on
Computational Systems Biology, Les Arcs, Apr 6-11
Course:
Computational Biology II , Master Approches Interdisciplinaires du
Vivant, CRI, Paris
Course: Whole cell Modelling , Ecole
Doctorale Frontieres du Vivant, CRI, Paris
-
PhD students
starting 2015
Andreea Beica (ENS) - Max-parallel approximations of
discrete stochastic models
Guillaume Terradot (Edinburgh) - Models
of bacterial growth and global regulation
William Waites
(Edinburgh) - Evolutionary strategies and tissue mechanics - Synthetic Biology Research
Centre.
-
PhD students finished 2015
Ricardo
Honorato-Zimmer (Edinburgh) - "Thermodynamics of graph-rewriting"
Milana Filatenkova (Edinburgh) - "Quantitative tool for in vivo analysis
of DNA processing proteins using High Resolution Sequence Data"
John-Wilson Kanamori (Edinburgh) - "Defining complex rule-based systems
in Space and over Time"
-
MSc. Interns (ENS)
Eleonore
Bellot - models of cellular entropy production rate
Xavier Zaoui -
models bacterial growth and interferences between antibiotics
Danae
David - knowledge representation in the biochemistry of signalling
pathways
Ihab Boulas - models of transmission of editing
plasmids
Keynote: ICFEM
2014, special track biology, Luxembourg, 3-7 Nov
Keynote and
Invitation: TUCS
Distinguished Lectures, Turku, Oct 31 (shifted)
Talk:
Invitation: Workshop on
Control Engineering and Synthetic Biology, 10-12 Sep, Oxford
Invitation: Luca Cardelli Fest, Cambridge, Sep 8-9
Keynote:
SASB workshop, Munich, Sep 10 (declined)
Keynote: ISGSB 2014, Durham, Sep 5-8
(declined)
Keynote: Workshop on Graph-based tools
York, Jul 25
Keynote: VEMDP Vienna, Jul
17
Invitation:
Dagstuhl Seminar,"Feature Interactions: The Next Generation" Jul
6-11 2014 (14281) (declined)
Invitation: "Open Problems in
Concurrency Theory" IFIP Working Group 1.8, 16-22 Jun 2014, Bertinoro
(declined).
Keynote: CS2Bio Berlin, Jun 6th
Talk: Edinburgh maths-bio
seminar, May 27
Keynote: Stochastic Biology: from
Cells to Populations, May 4-7 2014, IST Austria
Talk:
Bounded Rationality workshop Edinburgh, Apr 4-5
Talk: Flowers Consortium ISAB review London, Apr 1-2
Invitation: Franco-Scottish Computer Science Seminar, Edinburgh, Feb
14
Invitation: Seminaire d'histoire des
probas et de la statistique, Centre Koyre, Paris, 17 Jan 2014
-
Public outreach: news and views on Markus Covert piece in the
french edition of Scientific American, May
Consultant:
Member of Expert Panel for Fondation pour la Recherche Medicale
(declined)
EATCS Best paper award for "Transformation and Refinement
of Rigid Structures", 7th ICTG
conference
-
PC: RECOMB 2014, Pittsburgh,
Apr 2-5
PC: HSB'14 (3rd
International Workshop on Hybrid Systems Biology), Vienna
PC:
TermGraph'14 (3rd International Workshop on Hybrid Systems Biology),
Vienna
PC: Sixth
International Workshop on Bio-Design Automation, Boston, Jun 11-12
Invitation: Molecular Programming Workshop, Oxnard,
California, Dec 13-15, 2013 (declined)
Invitation: Workshop on
Information and Processes, CIAPA, Costa Rica, Dec 15-18 (declined)
Invitation: 10th birthday Conference,
laboratoire de mathématiques appliquées (MAS) de
l'école centrale Paris, Dec 11-13
Invitation: 8th Scottish
Category Theory Seminar, International Centre for Mathematical
Sciences, Edinburgh, Nov 29
Invitation: Wageningen Centre for Systems
Biology (WCSB), Nov 11-12
Invitation: Innsbruck Computer Science
colloquium, Oct 24
Talk+Panel: Franco-British Symposium on Synthetic
Biology 17-18 Oct, French Embassy, London
Invitation: Workshop on
Genomics, Computational & Systems Biology at TGAC, Norwich Sep 16 2013
(declined)
Invitation: 4th COMBINE Forum,
Institut Curie, Paris Sep 16-20
Invitation: UK-South Korea Global
Partnership workshop, London, July 8
Invitation: Flowers annual
meeting, Cumberland Lodge, May 8-9
Invitation: Centre Cournot Paris, Apr
25
Invitation: Colloque inaugural PPS-LIAFA,
Paris, Apr 22
Invitation: ETH Basel, Mar 21-22
Invitation: Systems Biology Seminar Dundee, Mar 11
Invitation:
Tokyo University (declined)
Invitation: Evaporation of things,
Edinburgh, Mar 13
Invitation: UCL, Apr 4 (cancelled)
Invitation:
Quo Vadis, Quantum Physics? Workshop, International
Institute of Physics, Natal Feb 25-Mar 1
Invitation: Workshop on
Graph Transformations, Leicester, Jan 25
-
Poster: Information, probability and inference in systems biology
(IPISB 2013), Edinburgh Jul 15-17
Contributed talk: winter q-bio
Hawai, Feb 19-21
-
Member of the ERC
Consolidator evaluation panel PE1 Mathematics
ERC Advanced Grant
2013-2017
Invited paper for the Prakash Panangaden Festschrift
Invited paper for the Glynn Winskel Festschrift
Invited paper for
the Samson Abramsky Festschrift
Founding member of the Edinburgh
multi-scale modelling group
-
PC: CMSB
2013
PC: CAV 2013
Keynote: IoSSB annual conference, Nov 14,
Imperial, London
Keynote:
EuroSysBio, Madrid, Oct (?)
Keynote: MeCBIC 2012,
Newcastle, Sep 8
Keynote: Session on 'Computability, Logical and
Physical', Logic
Colloquium 2012, Manchester, Jul 12-18
Keynote: LSB'12
LICS satellite, Dubrovnik, June 30
Keynote: Newton Institute
Workshop on "The Incomputable", Kavli Royal Society International
Centre, Chicheley Hall, Jun 12-15
Keynote: CMACS Workshop on Systems Biology
and Formals Methods (SBFM'12), NYU, Mar 29-30
Keynote: NVTI (Nederlandse Vereniging voor
Theoretische Informatica), Utrecht, Mar 23
Keynote: Lorentz Center Workshop,
Bioinformatics and Systems Biology - Bridging the Divide, Leiden,
Feb 14-17
-
Invitation: Dagstuhl Seminar (12352) "Information
Flow and its applications", Jul 26-31
Invitation: Leicester Computer
Science seminar on Latest Research Directions, Feb 3
-
Director
of the Centre for Synthetic and Systems Biology at Edinburgh
(SynthSys)
Invited paper to Philosophical Transactions A/Interface
Focus for the Turing Centenary
Session chair at the Turing Centenary
Symposium, Edinburgh, May 11
-
Course: BCI PhD summer
school Udine, Sep 10-14
Course: Workshop on Formal
Approaches to Modelling in Systems Biology Postgraduate course,
SynthSys, Edinburgh, Apr 23-27
Course: Computational
Biology Undergraduate course, AIV, Paris, Mar 19-22
PhD:
(examiner) Thomas Courtat, Universite Paris Diderot, Jan 30
-
PC
co-chair: FMSB workshop (Formal Methods in Systems Biology), satellite
of CAV'12
PC: DCM 2012,
satellite of CiE 2012
PC: CAV 2012
PC: CMSB 2012
PC: RC 2012
PC: ICALP 2012 (declined)
PC: TAMC 2012, Beijing (declined)
PC: RTA 2012 (declined)
PC: Ackermann prize jury (declined)
PC:
Workshop on Natural Computing and Graph Transformation, satellite to the
6th
International Conference on Graph Transformations, Bremen, Sep 24-29
(declined)
Keynote: FHIES'12, Paris, Aug 27-28
(declined)
Keynote: DNA
17, CalTech, Pasadena, Sep 2011
Keynote: BioCAD workshop at 12th
ICSB 2011 (declined)
Keynote: CALCO'11 Fourth
International Conference on Algebra and Coalgebra in Computer Science,
Aug 30-Sep 2 2011, Winchester
Keynote: Workshop on Computational Systems
Biology, Jun 7 - 9, ETH, Zurich
Keynote: Workshop Toward Systems
Biology, May 30 - Jun 1, Grenoble
Keynote: CSBE International
Scientific Advisory Board Talk, Edinburgh, May 19
Keynote:
Bioinformatics IPA Spring days,
Apr 12-14, Netherlands
Keynote: Final Meeting ANR Choco, Apr 4-7
Keynote: CS2Bio 2011,
Iceland (declined)
-
Invitation: Molecular Programming Workshop, Jun
16-18, 2011, Friday Harbor Labs, Washington State
Invitation: Departmental Seminar, School of Computer Science,
Birmingham, May 5-6
Invitation: EBI Departmental Seminar, Cambridge,
Feb 8
Invitation: MSR Cambridge, Feb 7
Invitation: Dagsthul
Seminar, decision procedures in hard/soft and bio-ware (declined), Jul
2011
Invitation: Departmental Seminar, School of Computer Science,
Aberdeen (declined)
-
Best model prize for the Edinburgh team at
European finals IGEM, Amsterdam, Oct
Panelist on the DNA 17 "Hard
Problems in DNA Computing and Molecular Programming"
Editorial Board
of
Mathematical Structures in Computer Science
Invitation to Home
Office Workshop on Synthetic Biology, Royal Society, London, Sep 29
-
Course: ER-06
Winter School ENS Lyon Feb 14-18
Course: Computational Biology, undergraduate
course, AIV, Paris, Jan
Course: Kappa tutorial, CSBE, Edinburgh, Feb
9
-
PC: MFPS
2011, CMU, Jul
PC: CMSB 2011, Rocquencourt,
May
PC: CompMod 2011,
Aachen, Sep 10
PC: ISMB/ECCB 2011, Vienna
PC: qBIO rule-based workshop, 2011
PC: Chair of special session,
TAMC, Tokyo (declined)
Keynote: ICSB'10 special workshop
on Advanced Modeling and Simulation Techniques, Edinburgh, Oct
15
Keynote: ICSB'10, Combinatorial and Multiscale Modeling session,
Edinburgh, Oct 13
Keynote: HiBi'10 Oct, Twente (declined)
Keynote: Computer Science Symposium, IST Austria, May 6-7
2010
Keynote: LICS'10, Jul
14, Edinburgh
-
Invitation: Ed Clarke's CMACS
seminar, CMU, Feb 19
Invitation: Departmental Seminar, Oxford,
Computer
Science, May 1
Invitation: Departmental Seminar, Systems Biology
Ireland, Dublin, Dec 13-15
Invitation: Dagsthul seminar,
Verification over discrete-continuous boundaries (declined), Jul
2010
Invitation: MSR Cambridge, Jun 16-18
Invitation: INRIA
Porgy project, Bordeaux, Jun 4-5
Invitation: ICNAMM invitation for
mini-symposium, Rhodes, Sep (declined)
-
co-Chair of the
"Combinatorial and Multiscale Modeling session" session ICSB'10
Chair of the ICSB'10 tutorials, Oct 10, Edinburgh
Chair of the SIG
Biopathways ISMB'10, Jul 10, Boston
Best model prize for the
Edinburgh team at IGEM, Boston, MIT, Nov
-
PhD: (examiner) Marek
Kwiatkowski, University of Edinburgh, Oct 22
-
PC: ICSB'10,
Edinburgh
PC: MFPS'10, Ottawa
PC: LICS'10, Edinburgh
PC:
ISMB'10, Boston
PC: CONCUR'10, Paris
PC: CS2Bio, Amsterdam, Jun 10
PC: CSL'10 (declined)
PC: RC'10, reversible computation, Bremen, Jul
2-3 (declined)
Keynote: Emerging
Modelling Methodologies in Medicine and Biology, ICMS Workshhop, Jul
20-24, Edinburgh
Keynote: 4th Scottish biosystems modelling network,
6th Annual Aberdeen Systems Biology Symposium, Aberdeen, May 15,
2009
Keynote: Qbio Systems Biology conference, Peking University,
Beijing, Jul 17 (declined)
Keynote: From Biological Networks to Cellular Function: Evolution,
Dynamics and Spatial Organization, Jun 10-12, Abdus Salam ICTP,
Trieste (declined)
Keynote:
Collaborative Conference on Bioinformatics, Jun, OCCBio, Ohio
(declined)
Keynote: International Conference on Rewriting Theory and
Applications, RTA 2009,
Jun 29-Jul 1, Brasilia (Brasil)
Keynote: QAPL 2009, 7th Workshop on
Quantitative Aspects of Programming Languages, Mar 28-29, York (UK),
ETAPS workshop
Keynote: Bridging The Gap workshop, Glasgow, Jul
17
Keynote: Discrete models
of biological networks, CIRM workshop, Nov 3-7
-
Invitation: "Bridging the gap" lecture, Sheffield
Invitation:
Department of Systems Biology Seminar, Warwick Jan 27
Invitation:
Gennetec training course Jan 21
Invitation: Dagsthul seminar, Formal
Methods in Molecular Biology, Feb 2009 (declined)
Invitation: COSBI
center, Trento (declined)
Invitation: Leeds logic seminar
(declined)
-
Kappa language mentioned in a Nature technology
feature that discusses the complexity of cellular interactions, Jul
16
Interview Nature, Jun 9
Bio-modelling workshop, Bellairs
Institute, Barbados, Mar 16-20
-
PC: Theory and Applications of
Models of Computation (TAMC 09), 26-30 May 2009, Changsha, China.
PC: Reversible Computation, RC'09, satellite workshop of ETAPS 2009,
York Mar 22 2009
PC: ICE'09
PC: SOS'09
PC: CompMod'09, 2nd International
Workshop on Computational Models for Cell Processes
PC co-chair:
DCM'09
Keynote: Nordic Workshop on Programming Theory,
Tallinn, 19-21 Nov 2008
Keynote: Natural Computing Summer
School, Bertinoro, Sep 2008
Keynote: ESF Workshoop on
Correlations, Brussels, Aug 2008
Keynote: 9th Workshop on Membrane
Computing, Edinburgh Jul 2008
Keynote: Foundations of Informatics,
Computing and Software (FICS'08), Shanghai, Jun 3-6 2008
Keynote:
EPFL Summer Research Institute (SuRI) Jul 07-12 2008, Lausanne
Keynote: SOS ICALP'08 workshop, Jul 12 2008, Reykjavik
Keynote:
bi-invited talk PAuL and SOS ICALP'08 workshops, Jul 6 2008,
Reykjavik
Keynote: Formal Methods in System Biology 2008, Cambridge,
Jun 4-5 2008
Keynote: Workshop on "Computational Models for Cell
Processes", Turku, May 27 2008
Keynote: 5th annual Conference on
Theory and Applications of Models of Computation (TAMC 2008), Xi'an,
China, Apr 25-29 2008
Keynote: 7th annual thematic school of the
Epigenomics program "Modelling of complex biological systems in the
context of genomics", Villeneuve d'Ascq, Apr 7-11 2008
Keynote:
Samson Abramsky's Clifford Lectures, New-Orleans, Mar 16-22 2008
Keynote: Summer School MOVEP, Jun 23-27 2008, Orleans
Keynote:
Journee Francaises de Langages Applicatifs, Jan 2008 (declined)
-
Invitation: Tri-Institutional Seminar Series, Rockfeller, MSKCC
and WMCCU, Feb 14 2008
Invitation: Northeastern University College
of Computer and Information Science colloquium, Feb 11 2008
Invitation: QMW distinguished seminar
Invitation: Distinguished Scholar
Invitation, Chinese Academy of Science, Institute of Software, Beijing
May 1-15 2008
Invitation: Tsinghua University, Beijing May 16-30
2008
-
SFI external Faculty member 2008-2011
Harvard Medical
School Visiting Professor 2007-2008
-
PC: ICE ICALP'08
workshop
PC: FBTC'08 ICALP'08 workshop
PC: QPL-DCM'08 ICALP'08
workshop
PC: Onward! 2008 OOPSLA workshop
PC: LICS'08
PC:
BioPathways ISMB'08 workshop (Toronto)
PC: ISMB'08
PC:
ESOP'09
Keynote: American Society of Cell Biology,
Systems Biology of Receptor Tyrosine Kinase Networks session, Dec 1
2007
Keynote: Asian Symposium on Programming Languages and Systems
(APLAS 2007) Nov 29-Dec 1 2007, Singapore
Keynote: CMSB'07,
Computational Methods in Systems Biology, Edinburgh, Sep 2007
Keynote: IICQI Iranian International Conference on Quantum Information,
Kish, Sep 10 2007
Keynote: WG 1.8 Workshop on Applying Concurrency
Research in Industry, Lisbon, Sep 7 2007
Keynote: International
Conference on Concurrency Theory (CONCUR 2007), Lisbon, Sep 4-7,
2007
Keynote: E. Shapiro symposium, Jul 9-10, Paris, 2007
Keynote: 5eme ecole thematique "Modelling of complex biological systems
in the context of genomics", Evry, Apr 30-May 4 2007
Keynote:
Mathematical Foundations of Programming Semantics (MFPS), Tulane, Apr
10-14 2007
Keynote: International Workshop on graph transformation
for verification and concurrency (GT-VC), Lisbon, Sep 3 2007
-
Invitation: Sharif University, Tehran, Sep 13 2007
Invitation:
Sloane-Kettering Cancer foundation, New York, Jun 21 2007
Invitation: Workshop on SBML specification, Santa Fe, Jun 14-15
Invitation: MIT Bioinformatics seminar Feb 28 2007
-
Scientific Board Ecole Doctorale Interdisciplinaire FdV, 2007
-
PC:
"Protein Interactions and Molecular Networks" ISMB/ECCB 2007
PC:
CMSB'07, Computational Methods in Systems Biology, Edinburgh, Sep
2007
PC: Bio Pathways, ISMB/ECCB 2007 satellite
PC: POPL 2008,
Edinburgh, Sep 27-28 2007
PC: QAPL07, ETAPS satellite
PC:
co-Chair DCM07, LICS and ICALP satellite, Jul 15 2007
PC: NETTAB
2007
Keynote: International Conference Emerging Trends
in Concurrency Theory, Ecole Polytechnique Nov 13-15 (declined)
Keynote: Societe Marocaine de Bio-Informatique, Tanger, Nov 2006
(declined)
Keynote: Jobim satellite, "Modeles dynamiques: reseaux
metaboliques et interaction hote-pathogene", Jul 4, Bordeaux
Keynote: Abstraction, modularite et compositionnalite dans les reseaux
geniques et proteiques, ACI VicAnne, 23 Jan
Keynote: Second Workshop
on Quantum Computation, Barbados, 19-26 Mar
Keynote: Bionetworks,
Workshop Geocal'06 13-17 Feb
Keynote: ASL Meeting May, categorical
quantum logic (declined)
-
Invitation: Theory Lunch, Harvard
Medical School, Oct
Invitation: Santa Fe Institute, Jun 4-14,
2006
Invitation: Dagstuhl seminar, Simulation and Verification of
Dynamic Systems, 17-22 Apr (declined)
Invitation: ICT Trento,
Microsoft
Keynote: MOCA day, May 19, Lille
Invitation: Fontana
lab at Harvard Medical School Boston, May 2006
Invitation:
Petit-dejeuner valorisation, Universite Paris-Diderot, Dec 14. -
Founding member of IFIP WG
1.8 working group
Member of the external review committee of ICT
Trento
Member of the experts group of ANR (Agence National de la
Recherche)
Member of the INRIA Rocquencourt CR2 recruitment
panel
Participation to the SFI Business Network and Board of
Trustees Symposium, Nov 2-4
Member of the working group
"Informatique quantique"/"logique et complexite", GDR Info et Maths,
Jun
-
PhD: (examiner) Simon Perdrix, Dec 11, Grenoble
PhD:
(examiner) Mehrnoosh Sadrzadeh, Montreal
PhD: (supervisor) Samuel
Hym
PhD: (supervisor) Fabien Tarissan
Course: "Models of
Biological Networks", MPRI, Sep 2006-Feb 2007
-
PC: FLOPS'06
PC co-chair: Geocal06, Workshop on Probabilistic Models, Feb,
Luminy
PC: CNRS Interdisciplinary Summer School on Life Sciences,
Berder
PC: MeCBIC'06, Workshop On Membrane Computing and
Biologically Inspired Process Calculi)
Keynote: Workshop
on Classical and Quantum Information Security, Caltech, 15-18 Dec
2005
Invited Talk: "Reversible Process Algebras", Montpellier,
Geocal, 17-18 Mar 2005
Invited Talk: "Biologie Formelle", Seminaire
Logique et Philo, Paris 1, 22 Apr 2005
Invited Talk:
"Measurement-based quantum computing", Birmingham, MFPS XXI, 18-21 May
2005
Invited Talk: "LMP approximants", Birmingham, MFPS XXI, 18-21
May 2005
Talk: "Property-driven statistics of biological networks",
Edinburgh, CMSB'05, 3-5 Apr 2005
Talk: "Self-assembling graphs",
IWINAC, 15 Jun 2005
Talk: "Pauli Measurements are universal",
Chicago, QPL05, 1 Jul 2005
Talk: "Determinism and the one-way
model", Tokyo, EQIS05, 26-30 Aug 2005
Keynote: "The measurement
calculus", Oxford Computing Lab, 2-4 Feb 2005
-
Invitation:
Boston, Harvard, Walter Fontana 18-23 Jan 2005
Invitation:
Innsbruck, Hans Briegel, 5-11 Feb 2005
Invitation: Lectures on
measurement based quantum computing, Mio Murao, Tokyo, 12-24 Feb
2005
Invitation: Formal Molecular Biology, Rene Vestergaard, JAIST,
21-22 Feb 2005
Invitation: Domain Theory and Space-time Structure,
Bellairs Workshop 25-29 Apr 2005
Invitation: Boston, Harvard, Walter
Fontana 5-14 May 2005
Invitation: IQC, Waterloo, Ontario, 12-29 Jul
2005
Invitation: Montreal, McGill, Prakash Panangaden 6-24 Oct
2005
-
Course: "Models of Biological Networks", MPRI, Sep
2005-Feb 2006
PhD: (examiner) Jerome Feret (Ecole Polytechnique) 25
Feb 2005
PhD: (examiner) Francisco Alberti (Universite
Paris-Diderot) 27 May 2005
-
Organisation: Q-day 2, IHP, 8-9 Dec
2005 Paris
PC: CONCUR'05
PC: CMSB'05
PC: ISMB'05
PC:
MFPS'05
PC: DCM'05
PC: Ecole de Berder'05
PC:
Bioconcur'05
PC: RIAMS 05 (workshop satellite IPG 2005)
Invited Talk: "Auto-assemblage", LaMI, Evry,
Jan 16
Invited Talk: "Hybrid Petri Nets", Atelier
Epigenese/Genopole, Evry, Jan 23
Invited Talk: "Projective
Brane-Calculus", Ecole "Modelisation et simulation de processus
biologiques", Evry, 1 Apr
Invited Talk (Prakash Panangaden): "A
Fixpoint Logic for probabilistic processes", Oxford Computing Lab, 9-15
Feb
Invited Talk: Ecole interdisciplinaire de biologie, Berder
(golfe du Morbihan), 21-26 Mar
Invited Talk: Ecole Evry-Genopole, 29
Mar-3 Apr
Invited Talk: Dagstuhl Seminar 04241 Workshop on Process Calculi and
Graph Transformation, 6-11 Apr(declined)
Conference Talk:
"Reversible Process algebras", CONCUR'04, London, 31 Aug
Invited
Talk: "Parsimonious and robust implementations of generators in the
one-way model", IQC, Waterloo
Keynote: "Almost sure Bisimulation",
Bellairs Workshop on Probabilities in AI, Barbados, 18-25 Apr
Keynote: "Formal Molecular Biology", Logic in Systems Biology Workshop,
Turku, 18 Jul
Invited Talk: "Formal Biology, the next science?",
LIX, 11 Jun
-
Invitation: Martin Escardo, University of
Birmingham, Jun
Invitation: Elham Kashefi, Institute for Quantum
Computing, Waterloo University, 15 Oct-15 Nov
Invitation: Prakash
Panangaden, McGill University, 3-7 Nov
Invitation: Josee
Desharnais, Universite de Laval, Quebec, 6-26 Aug
-
Public
outreach: bio-informatique, Science & Vie, Dec
-
Course:
"Modeles Probabilistes et Modeles Biologiques", ENSTA, Feb-Apr
Course: "Modeles Concurrents des Systemes Biologiques", DEA de
Programmation Paris 7, Jan-Apr
Course: "Biologie Formelle", MPRI
Paris 7, 50h, Oct-Feb
PhD: (supervisor) Michel Hirschowitz,
Universite Paris-Diderot, Dec 17
-
Organisation: Q-Day, Dec 14,
Paris
PC (co-chair): CMSB'04, Paris, 26-28 May
PC: Logic and
Systems Biology, LICS'04 Satellite, Finland, 18 Jul
PC:
FOSSACS'05
PC: BIOCONCUR'04
Keynote: "Conditional Expectation and LMPs",
MFPS, 19-22 Mar (mathematical foundations of programming and
semantics)
Keynote: "Conditional Expectation and LMPs", Workshop on
Proof Theory and Algorithms, ICMS, Edinburgh, 23-29 Mar
Keynote:
"Martingales and Markov interactive approximation", Bellairs Workshop on
Domain Theoretic Methods in Probabilistic Processes, Barbados, 20-27 Apr
2003
Keynote: Séminaire LIFL modélisation
régulation et interaction biologique, Lille, 5 May
Invited
course: Concurrency and Formal Biology, Trento, May 19th/May 30th, 20
hours
Keynote: "Core Formal Molecular Biology", Workshop on
Concurrency Theory, Fields Summer Program, Ottawa, Jun 19-20
Talk:
"Graphs for Formal Molecular Biology", CMSB'03, Rovereto, 24-26 Feb
Talk: "A formal modeling language for the working molecular biologist",
CMSB'03, Rovereto, 24-26 Feb
Talk: "Core Formal Molecular Biology"
deuxième réunion de l'AS "Méthodes formelles pour
la mobilité", Lyon, 10-11 Mar
Talk: "Core Formal Molecular
Biology", ESOP'03, Warsaw, 9-11 Apr
Talk: "A Fixpoint Logic for
Labeled Markov Processes", FICS'03, Warsaw, 12-13 Apr
Talk: "Labeled
Markov Processes: stronger and faster approximants", LICS'03, Ottawa,
Jun 22-25
Talk: "Conditional Expectation and the approximation of
Labeled Markov Processes", CONCUR'03, Marseille, Sep 2003
Talk: PPS
Scientific Committee, Nov 14
Talk: Journees Graphes, Réseaux
et Modélisation, Dec 17-18, Paris
-
Outreach: Master
class Science & Television, Nov 13, Paris
-
Invited course:
Formal Molecular Biology, Bologna, 20 hours, Sep 22-Oct 3
Course:
"Modelisation de Systèmes biologiques", Magistère
deuxième année ENS Paris et ENS Cachan, Oct-Jan
PhD:
(examiner) Daniele Varacca (BRICS) Nov 24, Aarhus
PhD: (examiner)
Frederic de Jaeger (Universite Paris-Diderot) Nov 13
-
PC:
FOSSACS'2003 (Foundation of software sciences and computer systems) Apr
7-9
PC: TLCA'2003 (Typed lambda-calculus and applications)
PC:
CMSB'2003 (Computational methods in systems biology)
PC: WAIT'2003
(Argentinian Workshop on Theoretical Computer Science), Apr
PC
(chair): Bio-Concur'2003, satellite of CONCUR'03, Sep
Talk: Journées du GDR ALP 28-29 Jan
Talk: Séminaire PPS Feb 14
Talk: Séminaire Logique
Chambéry, Mar 14
Talk: Institut Jacques Monod, U.
Paris-Diderot
Talk: ENS Cachan, Journée
Sécurité Sep 27
Talk: Méthodes Formelles pour
la Mobilité, Action Spécifique CNRS, Dec 6, Paris 13
-
Invitation: COGS Lab, Sussex University, 4-9 Feb
Invitation:
PPS Theoretical Computer Science Spring School 24-29 Mar
-
PC: LICS'2002
PC (co-chair): Biopathways
satellite ICSB'02 "Function in Biological Networks", Stockholm